By scholarshipswithaakash@gmail.com 
📅 Application Deadline: 10 September 2025
📍 Location: Uppsala, Sweden
💼 Employment Type: Full-time, Temporary (4 years)
🔗 Apply Here: PhD Student Position – Computational Genomics at Uppsala University
🌟 Introduction – PhD Opportunity in Sweden’s Prestigious Uppsala University
Are you passionate about evolutionary genomics, bioinformatics, and machine learning? This fully-funded PhD Student Position in Computational Genomics at Uppsala University offers you a unique opportunity to work at the intersection of genetics, ecology, and AI. Then this PhD Student Position in Computational Genomics is for you.
Hosted by the Department of Medical Biochemistry and Microbiology (IMBIM), this project aims to unlock how marine species like krill and Atlantic herring adapt to environmental change. If you’re ready to combine your computational skills with cutting-edge genomics research, this could be the stepping stone for your career in academic research.
🧬 About Uppsala University & IMBIM
Uppsala University, founded in 1477, is one of the top-ranked research universities in Europe. The Department of Medical Biochemistry and Microbiology (IMBIM) is home to world-class research in:
- 🧪 Comparative & evolutionary genomics
- 🔬 Functional genomics
- 💉 Immunology & microbiology
- 🧫 Biochemistry & cell biology
With a highly international research environment, IMBIM is a hub for cutting-edge scientific discoveries with real-world impact on health, biodiversity, and sustainability.
Learn More: IMBIM Research Areas – Uppsala University
📚 Project Overview – Adaptation Genomics in the Ocean
This four-year project, titled “Adaptation Genomics in the Ocean: Predicting Functional Variation in Marine Life with Machine Learning”, is led by:
- 👨🔬 Andreas Wallberg (Main Supervisor – Swedish Research Council funded)
- 👨🔬 Leif Andersson (Co-supervisor – Knut and Alice Wallenberg Foundation funded)
🌊 Research Focus:
Marine keystone species like krill and Atlantic herring are critical to ocean ecosystems. This project will:
- Use advanced Machine Learning (ML) to predict how genetic variation drives adaptation.
- Analyze population genomics data to identify functional gene variants.
- Integrate ML models with functional genomics to prioritize adaptive coding and regulatory variants.
🔍 Key Research Areas
🦐 Krill – Visual Adaptation in Changing Seas
- Studying opsin proteins and their evolution.
- Predicting functional mutations that help krill adapt to different ocean light environments.
- Understanding sensory system adaptation to environmental gradients.
🐟 Atlantic Herring – Adaptation to the Baltic Sea
- Functional annotation of adaptive genetic variants.
- Integrating deep learning with tissue-specific ATAC-seq data (brain, gills, liver, larvae).
- Predicting regulatory activity of noncoding variants linked to adaptation.
🎯 Why This Research Matters
✅ Biodiversity Conservation: Helps predict how marine species will respond to climate change.
✅ Sustainable Fisheries: Supports management of key marine resources.
✅ Scientific Innovation: Advances AI-driven genomics frameworks for non-model species.
📌 Duties & Responsibilities
As a PhD student, your primary role will be research and academic development:
- 💻 Conduct computational analyses & bioinformatics research.
- 📊 Develop & apply ML models for genomic prediction.
- 📚 Participate in doctoral-level courses.
- 👩🏫 Engage in limited teaching (up to 20% of time).
🎓 Eligibility Requirements
To apply, you must have:
- 📜 Master’s degree in bioinformatics, computer science, biology, or genomics.
- 🖥️ Experience with Linux/UNIX and programming languages (Python, Bash, Perl).
- 📈 Knowledge of statistical analysis (R).
- 🧬 Hands-on experience with NGS data processing.
- 🌍 Understanding of biodiversity and evolution.
- 🗣️ Strong written & spoken English proficiency.
🏆 Selection Criteria
Applicants will be evaluated on:
- 🎓 Academic performance in relevant courses.
- 🧪 Prior research experience.
- 🤝 Collaboration skills.
- 🧠 Analytical thinking & problem-solving abilities.
📄 Application Process
📥 Required Documents:
- CV
- Cover Letter detailing research interests & skills
- Master’s Thesis (or draft)
- Publications (if available)
- Contact Info for Two Referees
📅 Deadline: 10 September 2025
🔗 Apply Here: Uppsala University Application Portal
💰 Salary & Employment Conditions
- 📅 Start Date: By agreement
- 💼 Full-time, 4 years
- 💸 Salary according to local agreement
- 📍 Located at Biomedical Centre, Uppsala
🌟 Why Choose Uppsala for Your PhD?
- 🌍 International research hub with top-tier scientists.
- 📚 Access to world-class facilities & datasets.
- 🏞️ Beautiful, historic university town with vibrant academic culture.
- 💡 Opportunities for interdisciplinary collaborations.
See Also
University of Pretoria Commonwealth Scholarship
❓ FAQs – PhD Student Position in Computational Genomics
1️⃣ What is the focus keyword for this position?
The focus keyword is PhD Student Position in Computational Genomics.
2️⃣ Is this position fully funded?
Yes ✅ – tuition and salary are covered under Swedish doctoral student employment conditions.
3️⃣ Can I apply without a Master’s degree?
You must have a Master’s degree or equivalent qualifications.
4️⃣ Do I need to know Swedish?
No – proficiency in English is required; Swedish is optional but helpful.
5️⃣ What programming skills are required?
Experience in Python, Bash, and statistical programming in R is expected.
📢 Final Thoughts
This PhD Student Position in Computational Genomics at Uppsala University is a rare opportunity to merge AI, genomics, and marine biology into groundbreaking research with real-world environmental impact. If you have the skills, curiosity, and passion for evolutionary science, this could be your career-defining moment.
📥 Apply before 10 September 2025 to start your journey towards becoming a leader in computational genomics.
🔗 Official Application Link: Click Here to Apply
🧑🎓 Author Bio
Mubeen Ali Niaz
Founder of ScholarshipsWithAakash.site
Mubeen curates top-ranked, fully funded scholarships for international students. With a strong background in global education and SEO, he helps students worldwide gain access to world-class research programs.
Stay tuned with Scholarships with Aakash — Where Your Academic Dreams Take Flight.
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